CREGS00075

From CREGS

Sequence Logo (What is a sequence logo ?)

IUPAC Consensus Sequence (What is the IUPAC code ?)

WDRHKVMDYDD[1]

Regulatory element length

11 base pairs

Status

Computationally predicted

Predicted by Improbizer

Description & Comments

Enriched in pharngeal genes containing neither M3_3 or M3_4

Similarity to other CREGS motifs

CREGS00055 (0.904 Rev. Comp. ) CREGS00066 (0.813) CREGS00069 (0.866) [[| (0.000)]]

Similarity to motifs in other organisms

Motif bound by

Expression Pattern

• Expressed
• Tissues & cells:

References

1. Gaudet J, Muttumu S, Horner M, and Mango SE. Whole-genome analysis of temporal gene expression during foregut development. PLoS Biol 2004 Nov; 2(11) e352. doi:10.1371/journal.pbio.0020352 pmid:15492775. PubMed HubMed [KEY-15492775]

All Medline abstracts: PubMed HubMed

Motif Representation Formats

Information Content Matrix (Total IC 8.6384 )

A [  0.13 0.04 0.34 0.74 0.00 0.17 0.36 0.09 0.00 0.13 0.11 ]
C [  0.00 0.00 0.00 0.13 0.00 0.06 0.55 0.00 1.23 0.00 0.00 ]
G [  0.00 0.13 0.60 0.00 1.49 0.34 0.00 0.74 0.00 0.09 0.23 ]
T [  0.09 0.09 0.00 0.11 0.11 0.00 0.00 0.17 0.19 0.06 0.13 ]

Position Frequency Matrix

A [    7   2   4   9   0   4   5   1   0   5   3 ]
C [    0   0   0   2   0   1   7   0  10   0   0 ]
G [    0   6   8   0  11   7   0   9   0   4   6 ]
T [    5   4   0   1   1   0   0   2   2   3   3 ]

Position Weight Matrix

A [   1.02 -0.43  0.33  1.35 -2.16  0.33  0.60 -1.05 -2.16  0.60  0.00 ]
C [  -2.16 -2.16 -2.16 -0.43 -2.16 -1.05  1.02 -2.16  1.49 -2.16 -2.16 ]
G [  -2.16  0.83  1.20 -2.16  1.62  1.02 -2.16  1.35 -2.16  0.33  0.83 ]
T [   0.60  0.33 -2.16 -1.05 -1.05 -2.16 -2.16 -0.43 -0.43  0.00  0.00 ]