CREGS00072

From CREGS

Sequence Logo (What is a sequence logo ?)

IUPAC Consensus Sequence (What is the IUPAC code ?)

NNNNNNNNNN[1]

Regulatory element length

10 base pairs

Status

Tested in vivo

Predicted by Improbizer

Description & Comments

Enriched in pharynx genes

Similarity to other CREGS motifs

CREGS00013_(SKN-1 Version 1) (0.836) CREGS00062 (0.885) CREGS00017 (0.819 Rev. Comp. ) CREGS00067 (0.801) CREGS00069 (0.806 Rev. Comp. ) [[| (0.000)]]

Similarity to motifs in other organisms

Motif bound by

Expression Pattern

• Expressed
• Tissues & cells:

References

1. Gaudet J, Muttumu S, Horner M, and Mango SE. Whole-genome analysis of temporal gene expression during foregut development. PLoS Biol 2004 Nov; 2(11) e352. doi:10.1371/journal.pbio.0020352 pmid:15492775. PubMed HubMed [KEY-15492775]

All Medline abstracts: PubMed HubMed

Motif Representation Formats

Information Content Matrix (Total IC 9.3147 )

A [  0.03 0.07 0.03 0.00 0.00 1.40 0.05 0.01 0.01 0.06 ]
C [  0.02 0.01 0.24 0.05 0.75 0.12 1.69 1.69 0.01 0.03 ]
G [  0.04 0.11 0.00 0.05 0.18 0.00 0.01 0.05 0.00 0.07 ]
T [  0.08 0.14 0.73 1.49 0.05 0.00 0.01 0.01 0.01 0.02 ]

Position Frequency Matrix

A [    2   3   0   0   0  11   0   0   4   4 ]
C [    2   0   3   0   9   1  12  12   3   2 ]
G [    2   4   0   1   2   0   0   0   2   5 ]
T [    6   5   9  11   1   0   0   0   3   1 ]

Position Weight Matrix

A [  -0.43  0.00 -2.16 -2.16 -2.16  1.62 -2.16 -2.16  0.33  0.33 ]
C [  -0.43 -2.16  0.00 -2.16  1.35 -1.05  1.73  1.73  0.00 -0.43 ]
G [  -0.43  0.33 -2.16 -1.05 -0.43 -2.16 -2.16 -2.16 -0.43  0.60 ]
T [   0.83  0.60  1.35  1.62 -1.05 -2.16 -2.16 -2.16  0.00 -1.05 ]