CREGS00070

From CREGS

Sequence Logo (What is a sequence logo ?)

IUPAC Consensus Sequence (What is the IUPAC code ?)

NNNNNNN[1]

Regulatory element length

7 base pairs

Status

Tested in vivo

Predicted by Improbizer

Description & Comments

Enriched in late pharynx genes; mid-embryogenesis with low or absent expression at larave and adult

Similarity to other CREGS motifs

CREGS00061 (0.819 Rev. Comp. ) CREGS00017 (0.844) CREGS00023 (0.831) CREGS00074 (0.820) [[| (0.000)]]

Similarity to motifs in other organisms

Motif bound by

Expression Pattern

• Expressed
• Tissues & cells:
  • embryo
  • pharynx

References

1. Gaudet J, Muttumu S, Horner M, and Mango SE. Whole-genome analysis of temporal gene expression during foregut development. PLoS Biol 2004 Nov; 2(11) e352. doi:10.1371/journal.pbio.0020352 pmid:15492775. PubMed HubMed [KEY-15492775]

All Medline abstracts: PubMed HubMed

Motif Representation Formats

Information Content Matrix (Total IC 10.8683 )

A [  0.23 0.01 0.00 0.01 0.04 0.01 0.01 ]
C [  0.06 0.06 0.14 0.01 0.00 1.89 1.89 ]
G [  0.00 0.01 0.00 0.01 0.15 0.01 0.01 ]
T [  0.37 1.67 1.36 1.89 1.05 0.01 0.01 ]

Position Frequency Matrix

A [    4   0   0   0   0   0   0 ]
C [    1   0   1   0   0  12  12 ]
G [    0   0   0   0   2   0   0 ]
T [    7  12  11  12  10   0   0 ]

Position Weight Matrix

A [   0.33 -2.16 -2.16 -2.16 -2.16 -2.16 -2.16 ]
C [  -1.05 -2.16 -1.05 -2.16 -2.16  1.73  1.73 ]
G [  -2.16 -2.16 -2.16 -2.16 -0.43 -2.16 -2.16 ]
T [   1.02  1.73  1.62  1.73  1.49 -2.16 -2.16 ]