CREGS00067

From CREGS

Sequence Logo (What is a sequence logo ?)

IUPAC Consensus Sequence (What is the IUPAC code ?)

NNNNNNNNN[1]

Regulatory element length

9 base pairs

Status

Tested in vivo

Predicted by Improbizer

Description & Comments

Enriched in early pharynx genes

Similarity to other CREGS motifs

CREGS00068_(CEH-22 Version 2) (0.816 Rev. Comp. ) CREGS00072 (0.890) [[| (0.000)]]

Similarity to motifs in other organisms

Motif bound by

Expression Pattern

• Expressed
• Tissues & cells:
  • Pharynx;head;embryo

References

1. Gaudet J, Muttumu S, Horner M, and Mango SE. Whole-genome analysis of temporal gene expression during foregut development. PLoS Biol 2004 Nov; 2(11) e352. doi:10.1371/journal.pbio.0020352 pmid:15492775. PubMed HubMed [KEY-15492775]

All Medline abstracts: PubMed HubMed

Motif Representation Formats

Information Content Matrix (Total IC 9.7127 )

A [  0.10 0.00 0.00 0.00 1.66 0.01 0.00 0.02 0.10 ]
C [  0.03 0.77 0.21 0.31 0.01 1.66 0.84 0.04 0.00 ]
G [  0.06 0.00 0.00 0.78 0.01 0.01 0.28 0.30 0.14 ]
T [  0.26 0.31 1.10 0.00 0.06 0.06 0.00 0.21 0.40 ]

Position Frequency Matrix

A [    3   0   0   0  12   0   0   0   2 ]
C [    1   9   2   3   0  12   9   1   0 ]
G [    1   0   0   9   0   0   3   6   3 ]
T [    7   3  10   0   0   0   0   5   7 ]

Position Weight Matrix

A [   0.00 -2.16 -2.16 -2.16  1.73 -2.16 -2.16 -2.16 -0.43 ]
C [  -1.05  1.35 -0.43  0.00 -2.16  1.73  1.35 -1.05 -2.16 ]
G [  -1.05 -2.16 -2.16  1.35 -2.16 -2.16  0.00  0.83  0.00 ]
T [   1.02  0.00  1.49 -2.16 -2.16 -2.16 -2.16  0.60  1.02 ]