CREGS00062

From CREGS

Sequence Logo (What is a sequence logo ?)

IUPAC Consensus Sequence (What is the IUPAC code ?)

AWWWWHCASCTGHHTNNN[1]

Regulatory element length

18 base pairs

Status

Tested in vivo

Predicted by Probalistic segmentation

Description & Comments

Overrepresented in upstream elements (200bp) of chemosensory genes

Similarity to other CREGS motifs

CREGS00017 (0.818 Rev. Comp. ) [[| (0.000)]]

Similarity to motifs in other organisms

Motif bound by

Expression Pattern

• Expressed
• Tissues & cells:
  • Neurons
  • ADL

References

1. McCarroll SA, Li H, and Bargmann CI. Identification of transcriptional regulatory elements in chemosensory receptor genes by probabilistic segmentation. Curr Biol 2005 Feb 22; 15(4) 347-52. doi:10.1016/j.cub.2005.02.023 pmid:15723796. PubMed HubMed [KEY-15723796]

All Medline abstracts: PubMed HubMed

Motif Representation Formats

Information Content Matrix (Total IC 13.896 )

A [  0.11 0.14 0.13 0.27 0.19 0.07 0.00 1.90 0.00 0.00 0.00 0.00 0.05 0.09 0.00 0.00 0.00 0.00 ]
C [  0.00 0.00 0.00 0.00 0.00 0.10 1.90 0.00 0.69 1.90 0.00 0.00 0.18 0.10 0.00 0.00 0.00 0.00 ]
G [  0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 1.90 0.00 0.00 0.00 0.00 0.00 0.00 ]
T [  0.00 0.13 0.08 0.39 0.43 0.31 0.00 0.00 0.00 0.00 1.92 0.00 0.14 0.35 0.11 0.00 0.00 0.00 ]

Position Frequency Matrix

A [   12   6   7   5   4   2   0  12   0   0   0   0   1   2   0   3   3   3 ]
C [    0   0   0   0   0   2  12   0   8  12   0   0   6   2   0   3   3   3 ]
G [    0   0   0   0   0   0   0   0   4   0   0  12   0   0   0   3   3   3 ]
T [    0   6   5   7   8   8   0   0   0   0  12   0   5   8  12   3   3   3 ]

Position Weight Matrix

A [   1.73  0.83  1.02  0.60  0.33 -0.43 -2.16  1.73 -2.16 -2.16 -2.16 -2.16 -1.05 -0.43 -2.16  0.00  0.00  0.00 ]
C [  -2.16 -2.16 -2.16 -2.16 -2.16 -0.43  1.73 -2.16  1.20  1.73 -2.16 -2.16  0.83 -0.43 -2.16  0.00  0.00  0.00 ]
G [  -2.16 -2.16 -2.16 -2.16 -2.16 -2.16 -2.16 -2.16  0.33 -2.16 -2.16  1.73 -2.16 -2.16 -2.16  0.00  0.00  0.00 ]
T [  -2.16  0.83  0.60  1.02  1.20  1.20 -2.16 -2.16 -2.16 -2.16  1.73 -2.16  0.60  1.20  1.73  0.00  0.00  0.00 ]