CREGS00059

From CREGS

Sequence Logo (What is a sequence logo ?)

IUPAC Consensus Sequence (What is the IUPAC code ?)

NNNNNNNNNNNN[1]

Regulatory element length

12 base pairs

Status

Tested in vivo

Predicted by Improbizer

Description & Comments

Similarity to other CREGS motifs

CREGS00069 (0.829 Rev. Comp. ) CREGS00033 (0.830 Rev. Comp. ) [[| (0.000)]]

Similarity to motifs in other organisms

Motif bound by

Expression Pattern

• Expressed
• Tissues & cells:
  • anterior embryonic; head;pharynx

References

1. PubMed HubMed [KEY-15375261]

All Medline abstracts: PubMed HubMed

Motif Representation Formats

Information Content Matrix (Total IC 10.97 )

A [  0.18 0.07 0.20 0.06 0.01 0.69 0.00 0.06 0.00 0.08 0.03 0.14 ]
C [  0.00 0.20 0.00 1.40 1.89 0.00 0.11 0.06 0.16 0.09 0.07 0.05 ]
G [  0.17 0.00 0.07 0.00 0.01 0.23 1.45 0.00 0.08 0.01 0.02 0.01 ]
T [  0.09 0.38 0.38 0.06 0.01 0.04 0.00 1.40 0.54 0.19 0.10 0.17 ]

Position Frequency Matrix

A [    5   1   4   0   0   9   0   0   0   3   2   5 ]
C [    0   4   0  11  12   0   1   1   3   3   4   2 ]
G [    5   0   1   0   0   3  11   0   1   0   1   0 ]
T [    2   7   7   1   0   0   0  11   8   6   5   5 ]

Position Weight Matrix

A [   0.60 -1.05  0.33 -2.16 -2.16  1.35 -2.16 -2.16 -2.16  0.00 -0.43  0.60 ]
C [  -2.16  0.33 -2.16  1.62  1.73 -2.16 -1.05 -1.05  0.00  0.00  0.33 -0.43 ]
G [   0.60 -2.16 -1.05 -2.16 -2.16  0.00  1.62 -2.16 -1.05 -2.16 -1.05 -2.16 ]
T [  -0.43  1.02  1.02 -1.05 -2.16 -2.16 -2.16  1.62  1.20  0.83  0.60  0.60 ]