CREGS00044

From CREGS

Sequence Logo (What is a sequence logo ?)

IUPAC Consensus Sequence (What is the IUPAC code ?)

TTTTKGAAA[1]

Regulatory element length

9 base pairs

Status

Computationally predicted

Predicted by MEME

Description & Comments

Found downstream (1kb) of miRNA & protein coding genes.

Similarity to other CREGS motifs

CREGS00045 (0.944) [[| (0.000)]]

Similarity to motifs in other organisms

Motif bound by

Expression Pattern

• Expressed
• Tissues & cells:

References

1. PubMed HubMed [KEY-15317971]

All Medline abstracts: PubMed HubMed

Motif Representation Formats

Information Content Matrix (Total IC 17 )

A [  0.00 0.00 0.00 0.00 0.00 0.00 2.00 2.00 2.00 ]
C [  0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
G [  0.00 0.00 0.00 0.00 0.50 2.00 0.00 0.00 0.00 ]
T [  2.00 2.00 2.00 2.00 0.50 0.00 0.00 0.00 0.00 ]

Position Frequency Matrix

A [    0   0   0   0   0   0  12  12  12 ]
C [    0   0   0   0   0   0   0   0   0 ]
G [    0   0   0   0   6  12   0   0   0 ]
T [   12  12  12  12   6   0   0   0   0 ]

Position Weight Matrix

A [  -2.16 -2.16 -2.16 -2.16 -2.16 -2.16  1.73  1.73  1.73 ]
C [  -2.16 -2.16 -2.16 -2.16 -2.16 -2.16 -2.16 -2.16 -2.16 ]
G [  -2.16 -2.16 -2.16 -2.16  0.83  1.73 -2.16 -2.16 -2.16 ]
T [   1.73  1.73  1.73  1.73  0.83 -2.16 -2.16 -2.16 -2.16 ]