CREGS00036 (DAF-16 Version 1)

From CREGS

Sequence Logo (What is a sequence logo ?)

IUPAC Consensus Sequence (What is the IUPAC code ?)

TRTTTAC[1]

Regulatory element length

7 base pairs

Status

Computationally predicted

Predicted by Probalistic Segmentation

Description & Comments

Similarity to other CREGS motifs

CREGS00062 (0.803) CREGS00024 (0.821 Rev. Comp. ) CREGS00065 (0.803) CREGS00072 (0.844) CREGS00011_(TBP Version 1) (0.821 Rev. Comp. ) CREGS00037_(DAF-16 Version 2) (0.964) [[| (0.000)]]

Similarity to motifs in other organisms

Motif bound by

DAF-16 [2]

Expression Pattern

• Expressed
• Tissues & cells:

References

1. Murphy CT, McCarroll SA, Bargmann CI, Fraser A, Kamath RS, Ahringer J, Li H, and Kenyon C. Genes that act downstream of DAF-16 to influence the lifespan of Caenorhabditis elegans. Nature 2003 Jul 17; 424(6946) 277-83. doi:10.1038/nature01789 pmid:12845331. PubMed HubMed [KEY-12845331]

All Medline abstracts: PubMed HubMed

Motif Representation Formats

Information Content Matrix (Total IC 13 )

A [  0.00 0.50 0.00 0.00 0.00 2.00 0.00 ]
C [  0.00 0.00 0.00 0.00 0.00 0.00 2.00 ]
G [  0.00 0.50 0.00 0.00 0.00 0.00 0.00 ]
T [  2.00 0.00 2.00 2.00 2.00 0.00 0.00 ]

Position Frequency Matrix

A [    0   6   0   0   0  12   0 ]
C [    0   0   0   0   0   0  12 ]
G [    0   6   0   0   0   0   0 ]
T [   12   0  12  12  12   0   0 ]

Position Weight Matrix

A [  -2.16  0.83 -2.16 -2.16 -2.16  1.73 -2.16 ]
C [  -2.16 -2.16 -2.16 -2.16 -2.16 -2.16  1.73 ]
G [  -2.16  0.83 -2.16 -2.16 -2.16 -2.16 -2.16 ]
T [   1.73 -2.16  1.73  1.73  1.73 -2.16 -2.16 ]