CREGS00034

From CREGS

Sequence Logo (What is a sequence logo ?)

IUPAC Consensus Sequence (What is the IUPAC code ?)

DDMKWRSHNYHVTKWW[1]

Regulatory element length

16 base pairs

Status

Tested in vivo

Predicted by cis-ortho

Description & Comments

Found based on scanning genes for stringeent version

Similarity to other CREGS motifs

CREGS00033 (0.967) [[| (0.000)]]

Similarity to motifs in other organisms

Motif bound by

Expression Pattern

• Expressed
• Tissues & cells:
  • Neurons
  • AIY

References

1. Wenick AS and Hobert O. Genomic cis-regulatory architecture and trans-acting regulators of a single interneuron-specific gene battery in C. elegans. Dev Cell 2004 Jun; 6(6) 757-70. doi:10.1016/j.devcel.2004.05.004 pmid:15177025. PubMed HubMed [KEY-15177025]

All Medline abstracts: PubMed HubMed

Motif Representation Formats

Information Content Matrix (Total IC 18.5373 )

A [  0.17 0.33 1.85 0.00 0.13 0.44 0.00 0.09 0.04 0.00 0.19 0.19 0.00 0.00 0.37 0.09 ]
C [  0.00 0.00 0.07 0.00 0.00 0.00 0.09 0.59 0.07 0.19 0.37 0.07 0.00 0.00 0.00 0.00 ]
G [  0.09 0.13 0.00 0.11 0.00 0.56 1.61 0.00 0.09 0.00 0.00 0.80 0.00 0.09 0.00 0.00 ]
T [  0.26 0.07 0.00 1.65 1.54 0.00 0.00 0.19 0.46 1.26 0.09 0.00 2.00 1.72 0.35 0.11 ]

Position Frequency Matrix

A [    4   7  12   0   1   5   0   1   1   0   3   2   0   0   6   5 ]
C [    0   0   0   0   0   0   1   8   1   2   7   1   0   0   0   0 ]
G [    2   3   0   1   0   7  11   0   2   0   0   9   0   1   0   0 ]
T [    6   2   0  11  11   0   0   3   8  10   2   0  12  11   6   7 ]

Position Weight Matrix

A [   0.33  1.02  1.73 -2.16 -1.05  0.60 -2.16 -1.05 -1.05 -2.16  0.00 -0.43 -2.16 -2.16  0.83  0.60 ]
C [  -2.16 -2.16 -2.16 -2.16 -2.16 -2.16 -1.05  1.20 -1.05 -0.43  1.02 -1.05 -2.16 -2.16 -2.16 -2.16 ]
G [  -0.43  0.00 -2.16 -1.05 -2.16  1.02  1.62 -2.16 -0.43 -2.16 -2.16  1.35 -2.16 -1.05 -2.16 -2.16 ]
T [   0.83 -0.43 -2.16  1.62  1.62 -2.16 -2.16  0.00  1.20  1.49 -0.43 -2.16  1.73  1.62  0.83  1.02 ]