CREGS00029 (UNC-86 Version 1)

From CREGS

Sequence Logo (What is a sequence logo ?)

IUPAC Consensus Sequence (What is the IUPAC code ?)

CATNNNWAAT[1]

Regulatory element length

10 base pairs

Status

Tested both in vivo & in vitro

Predicted by Experiment

Description & Comments

Similarity to other CREGS motifs

CREGS00031_(UNC-86 & MYSTERY TF Version 1) (1.000) [[| (0.000)]]

Similarity to motifs in other organisms

Motif bound by

UNC-86 [1]

Expression Pattern

• Expressed
• Tissues & cells:
  • Neurons

References

1. Wang L and Way JC. Promoter sequences for the establishment of mec-3 expression in the nematode Caenorhabditis elegans. Mech Dev 1996 May; 56(1-2) 183-96. pmid:8798157. PubMed HubMed [KEY-8798157]

All Medline abstracts: PubMed HubMed

Motif Representation Formats

Information Content Matrix (Total IC 13 )

A [  0.00 2.00 0.00 0.00 0.00 0.00 0.50 2.00 2.00 0.00 ]
C [  2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
G [  0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 ]
T [  0.00 0.00 2.00 0.00 0.00 0.00 0.50 0.00 0.00 2.00 ]

Position Frequency Matrix

A [    0  12   0   3   3   3   6  12  12   0 ]
C [   12   0   0   3   3   3   0   0   0   0 ]
G [    0   0   0   3   3   3   0   0   0   0 ]
T [    0   0  12   3   3   3   6   0   0  12 ]

Position Weight Matrix

A [  -2.16  1.73 -2.16  0.00  0.00  0.00  0.83  1.73  1.73 -2.16 ]
C [   1.73 -2.16 -2.16  0.00  0.00  0.00 -2.16 -2.16 -2.16 -2.16 ]
G [  -2.16 -2.16 -2.16  0.00  0.00  0.00 -2.16 -2.16 -2.16 -2.16 ]
T [  -2.16 -2.16  1.73  0.00  0.00  0.00  0.83 -2.16 -2.16  1.73 ]