CREGS00018

From CREGS

Sequence Logo (What is a sequence logo ?)

IUPAC Consensus Sequence (What is the IUPAC code ?)

CACCTG[1]

Regulatory element length

6 base pairs

Status

Computationally predicted

Predicted by Probablistic segmentation

Description & Comments

Overrep in g-protein coupled receptors & histons. Shows positional bias (200bp upstream).

Similarity to other CREGS motifs

[[| (0.875 Rev. Comp. )]] CREGS00062 (0.981) CREGS00016 (0.939) CREGS00017 (0.860 Rev. Comp. ) CREGS00019 (1.000 Rev. Comp. ) CREGS00068_(CEH-22 Version 2) (0.802 Rev. Comp. ) CREGS00072 (0.887) [[| (0.000)]]

Similarity to motifs in other organisms

Motif bound by

Expression Pattern

• Expressed
• Tissues & cells:

References

1. McCarroll SA, Li H, and Bargmann CI. Identification of transcriptional regulatory elements in chemosensory receptor genes by probabilistic segmentation. Curr Biol 2005 Feb 22; 15(4) 347-52. doi:10.1016/j.cub.2005.02.023 pmid:15723796. PubMed HubMed [KEY-15723796]

All Medline abstracts: PubMed HubMed

Motif Representation Formats

Information Content Matrix (Total IC 12 )

A [  0.00 2.00 0.00 0.00 0.00 0.00 ]
C [  2.00 0.00 2.00 2.00 0.00 0.00 ]
G [  0.00 0.00 0.00 0.00 0.00 2.00 ]
T [  0.00 0.00 0.00 0.00 2.00 0.00 ]

Position Frequency Matrix

A [    0  12   0   0   0   0 ]
C [   12   0  12  12   0   0 ]
G [    0   0   0   0   0  12 ]
T [    0   0   0   0  12   0 ]

Position Weight Matrix

A [  -2.16  1.73 -2.16 -2.16 -2.16 -2.16 ]
C [   1.73 -2.16  1.73  1.73 -2.16 -2.16 ]
G [  -2.16 -2.16 -2.16 -2.16 -2.16  1.73 ]
T [  -2.16 -2.16 -2.16 -2.16  1.73 -2.16 ]