CREGS00017

From CREGS

Sequence Logo (What is a sequence logo ?)

IUPAC Consensus Sequence (What is the IUPAC code ?)

WWNWDYCASSTGVANWYD[1]

Regulatory element length

18 base pairs

Status

Computationally predicted

Predicted by OverrepestationGO cell motility term

Description & Comments

overrepesented in genes with major sperm protein (MSP) domains

Similarity to other CREGS motifs

CREGS00062 (0.818 Rev. Comp. ) [[| (0.000)]]

Similarity to motifs in other organisms

Motif bound by

Expression Pattern

• Expressed
• Tissues & cells:

References

1. McCarroll SA, Li H, and Bargmann CI. Identification of transcriptional regulatory elements in chemosensory receptor genes by probabilistic segmentation. Curr Biol 2005 Feb 22; 15(4) 347-52. doi:10.1016/j.cub.2005.02.023 pmid:15723796. PubMed HubMed [KEY-15723796]

All Medline abstracts: PubMed HubMed

Motif Representation Formats

Information Content Matrix (Total IC 14.718 )

A [  0.21 0.21 0.00 0.10 0.05 0.00 0.00 1.95 0.00 0.00 0.00 0.00 0.28 0.21 0.00 0.18 0.00 0.13 ]
C [  0.00 0.00 0.00 0.00 0.00 0.31 1.95 0.00 1.51 0.05 0.00 0.00 0.05 0.00 0.00 0.00 0.13 0.00 ]
G [  0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.08 1.54 0.00 1.97 0.13 0.00 0.00 0.00 0.00 0.08 ]
T [  0.18 0.15 0.00 0.13 0.33 0.36 0.00 0.00 0.00 0.00 1.97 0.00 0.00 0.00 0.00 0.23 0.05 0.15 ]

Position Frequency Matrix

A [    6   7   3   5   1   0   0  12   0   0   0   0   8  12   3   5   0   4 ]
C [    0   0   3   0   0   6  12   0  11   0   0   0   1   0   3   0   9   0 ]
G [    0   0   3   0   2   0   0   0   1  12   0  12   3   0   3   0   0   3 ]
T [    6   5   3   7   9   6   0   0   0   0  12   0   0   0   3   7   3   5 ]

Position Weight Matrix

A [   0.83  1.02  0.00  0.60 -1.05 -2.16 -2.16  1.73 -2.16 -2.16 -2.16 -2.16  1.20  1.73  0.00  0.60 -2.16  0.33 ]
C [  -2.16 -2.16  0.00 -2.16 -2.16  0.83  1.73 -2.16  1.62 -2.16 -2.16 -2.16 -1.05 -2.16  0.00 -2.16  1.35 -2.16 ]
G [  -2.16 -2.16  0.00 -2.16 -0.43 -2.16 -2.16 -2.16 -1.05  1.73 -2.16  1.73  0.00 -2.16  0.00 -2.16 -2.16  0.00 ]
T [   0.83  0.60  0.00  1.02  1.35  0.83 -2.16 -2.16 -2.16 -2.16  1.73 -2.16 -2.16 -2.16  0.00  1.02  0.00  0.60 ]