CREGS00005 (CETWIST (HLH-8) Version 1)

From CREGS

Sequence Logo (What is a sequence logo ?)

IUPAC Consensus Sequence (What is the IUPAC code ?)

CATATG[1]

Regulatory element length

6 base pairs

Status

Tested in vivo

Predicted by Experiment

Description & Comments

Same sequence as the restriction enzyme NdeI. A subset of E-box (CAnnTG)

Similarity to other CREGS motifs

[[| (0.875 Rev. Comp. )]] CREGS00014_(SKN-1 Version 2) (0.856) CREGS00029_(UNC-86 Version 1) (0.812 Rev. Comp. ) CREGS00031_(UNC-86 & MYSTERY TF Version 1) (0.812 Rev. Comp. ) [[| (0.000)]]

Similarity to motifs in other organisms

Motif bound by

CETWIST(HLH-8) [2]

Expression Pattern

• Expressed
• Tissues & cells:
  • vulval muscles; single sarcomere body muscle;

References

1. Harfe BD and Fire A. Muscle and nerve-specific regulation of a novel NK-2 class homeodomain factor in Caenorhabditis elegans. Development 1998 Feb; 125(3) 421-9. pmid:9425137. PubMed HubMed [KEY-9425137]

All Medline abstracts: PubMed HubMed

Motif Representation Formats

Information Content Matrix (Total IC 12 )

A [  0.00 2.00 0.00 2.00 0.00 0.00 ]
C [  2.00 0.00 0.00 0.00 0.00 0.00 ]
G [  0.00 0.00 0.00 0.00 0.00 2.00 ]
T [  0.00 0.00 2.00 0.00 2.00 0.00 ]

Position Frequency Matrix

A [    0  12   0  12   0   0 ]
C [   12   0   0   0   0   0 ]
G [    0   0   0   0   0  12 ]
T [    0   0  12   0  12   0 ]

Position Weight Matrix

A [  -2.16  1.73 -2.16  1.73 -2.16 -2.16 ]
C [   1.73 -2.16 -2.16 -2.16 -2.16 -2.16 ]
G [  -2.16 -2.16 -2.16 -2.16 -2.16  1.73 ]
T [  -2.16 -2.16  1.73 -2.16  1.73 -2.16 ]